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2022-85-7 molecular structure
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4-amino-5-fluoro-1,2-dihydropyrimidin-2-one

ChemBase ID: 9974
Molecular Formular: C4H4FN3O
Molecular Mass: 129.0924632
Monoisotopic Mass: 129.03383998
SMILES and InChIs

SMILES:
n1c(c(c[nH]c1=O)F)N
Canonical SMILES:
Nc1nc(=O)[nH]cc1F
InChI:
InChI=1S/C4H4FN3O/c5-2-1-7-4(9)8-3(2)6/h1H,(H3,6,7,8,9)
InChIKey:
XRECTZIEBJDKEO-UHFFFAOYSA-N

Cite this record

CBID:9974 http://www.chembase.cn/molecule-9974.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
4-amino-5-fluoro-1,2-dihydropyrimidin-2-one
IUPAC Traditional name
5-fluorocytosine
Synonyms
4-amino-5-fluoro-2(1H)-pyrimidinone
Flucytosine
5-Fluorocytosine
5-Fluorocytosine
4-Amino-5-fluoro-2(1H)-pyrimidine
Flucytosine, 5-FC
NSC 103805 6-Amino-5-fluoro-2(1H)-pyrimidinone
5-Fluoro Cytosine
4-Amino-5-fluoropyrimidin-2(1H)-one
4-Amino-1,2-dihydro-5-fluoro-2-oxopyrimidine
5-Fluorocytosine 98%
Ancobon
5-fluorocytosine
Ancotil
Flucytosine(Ancobon)
4-氨基-5-氟-2(1H)-嘧啶酮
氟胞嘧啶
5-氟胞嘧啶
5-氟胞苷
CAS Number
2022-85-7
EC Number
217-968-7
MDL Number
MFCD00006035
Beilstein Number
127285
Merck Index
144125
PubChem SID
160973281
24894928
24870520
PubChem CID
3366

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 8.308347  H Acceptors
H Donor LogD (pH = 5.5) -1.038721 
LogD (pH = 7.4) -1.0826211  Log P -1.0381233 
Molar Refractivity 28.1514 cm3 Polarizability 10.144007 Å3
Polar Surface Area 67.48 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Physical Property Safety Information Product Information Bioassay(PubChem)
Solubility
DMSO expand Show data source
Methanol expand Show data source
Water expand Show data source
Apperance
White Solid expand Show data source
Melting Point
295-297°C expand Show data source
295-297°C expand Show data source
298-300 °C (dec.)(lit.) expand Show data source
298-300°C expand Show data source
ca 297°C dec. expand Show data source
Storage Condition
-20°C expand Show data source
-20°C Freezer expand Show data source
Storage Warning
Harmful/Carcinogenic/Mutagenic/Teratogenic/Light Sensitive/Keep Cold expand Show data source
IRRITANT, LIGHT SENSITIVE expand Show data source
Light Sensitive expand Show data source
RTECS
HA6040000 expand Show data source
European Hazard Symbols
Harmful Harmful (Xn) expand Show data source
MSDS Link
Download expand Show data source
Download expand Show data source
Download expand Show data source
Download expand Show data source
Download expand Show data source
German water hazard class
2 expand Show data source
Risk Statements
63 expand Show data source
68 expand Show data source
Safety Statements
36/37 expand Show data source
TSCA Listed
false expand Show data source
expand Show data source
GHS Pictograms
GHS08 expand Show data source
GHS Signal Word
Warning expand Show data source
GHS Hazard statements
H341 expand Show data source
H361 expand Show data source
GHS Precautionary statements
P281 expand Show data source
P281-P201-P202-P308+P313-P405-P501A expand Show data source
Personal Protective Equipment
Eyeshields, Gloves, type N95 (US), type P1 (EN143) respirator filter expand Show data source
Storage Temperature
2-8°C expand Show data source
Purity
≥99.0% (HPLC) expand Show data source
98% expand Show data source
98+% expand Show data source
99% expand Show data source
Grade
purum expand Show data source
Salt Data
Free Base expand Show data source
Certificate of Analysis
Download expand Show data source
Empirical Formula (Hill Notation)
C4H4FN3O expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals Sigma Aldrich Sigma Aldrich TRC TRC
Selleck Chemicals - S1666 external link
Research Area
Description Infection
Biological Activity
Description Flucytosine (5-Fluorocytosine, 5-FC, Ancobon) is an antifungal drug with IC50 of 0.12 μg/mL in C. albicans.
Targets Fungal cells
IC50 0.12 μg/mL for C. albicans [
In Vitro Flucytosine inhibits the growth of C. neoformans in Sabouraud's dextrose broth at concentrations ≥ 1.25 mg/L, and Flucytosine of 50 mg/L causes a ~50% reduction in colony-forming unit (cfu)\ in the J774.16 killing assay with viability of J774.16 cells not affected measured by trypan blue exclusion. The combination of Flucytosine and IgGl monoclonal antibody to Cryptococcus neoformans capsular glucuronoxylomannan is more effective in reducing the numbers of C. neoformans colony-forming units in vitro with J774.16 murine macrophage-like cells than either agent alone. [2] The efficacy of Flucytosine (5FC) in combination with amphotericin B (AB) and fluconazole (FCZ) is studied against 35 yeast isolates, of which the 5FC-FCZ combination is antagonistic against Candida species, but for some Candida isolates synergism is found.[3]
In Vivo Administration of Flucytosine in combination with monoclonal antibody 2H1 to A/JCr mice infected with C. neoformans significantly reduces lung but not brain cfu, which is more effective than either agent alone. [2] The combination of intravenous Flucytosine in 0.9% saline (NaCl) and amphotericin B (AmB) provides synergistic antifungal activity and is associated with a lower incidence of nephrotoxicity than with AmB treatment alone. Infusion of Flucytosine (5-10 mg/kg/min) dissolved in 5% glucose into the renal artery of an in situ perfused kidney for 15 minutes increases renal blood flow (RBF) in the rat, and the renal vasodilatation persists for the duration of the Flucytosine infusion, with a maximal increase of 2.5±0.7 mL/min. [4]
Clinical Trials Clinical trail completed in evaluating the effectiveness and safety of Amphotericin B plus Flucytosine (5-Fluorocytosine) compared to Amphotericin B alone for a first episode of acute cryptococcal meningitis in AIDS patients, and comparing the effectiveness and safety of Fluconazole versus Itraconazole.
Features Flucytosine is first synthesized in 1957 but its antifungal properties discovered in 1964.
Protocol
Kinase Assay [1]
Microdilution method The culture media used are RPMI 1640 with glutamine, without bicarbonate and phenol red, buffered with morpholinopropanesulfonic acid (MOPS) (0.165 M, pH 7.0). Two-fold serial dilutions of Flucytosine (0.06-64 μg/mL) are prepared and dispensed in 50 uL aliquot, in flat-bottom 96-well assay plates which are kept frozen at -70 °C in sealed plastic bags until used. The inoculum is prepared spectrophotometrically and standardized to a concentration of 1.0-5.0 × 103 cfu per mL. A 50 μL volume of this suspension is used to inoculate each well containing 50 μL of the double concentration of Flucytosine to be tested. Once inoculated, each well therefore contains 100 μL of broth favoured over 200 μL to facilitate the agitation of the plates prior to spectrophotometric reading. After an incubation period of 24 and 48 hours at 35 °C, the plates are agitated for 3 minutes at 900 r.p.m. with a shaker and the optical density of the growth in each well is determined with the use of an automatic plate reader set at 495 nm. The inhibitory concentration of IC50 is computed mathematically.
Cell Assay [2]
Cell Lines J774.16 murine macrophage-like cell line
Concentrations Dissolved in PBS, final concentration 50 mg/L
Incubation Time 24 hours
Methods J774.16 murine macrophage-like cells plated on 96-well tissue culture plates are incubated with 500 u/mL murine recombinant gamma-interferon overnight at 37 °C. The medium is then replaced with fresh medium containing gamma-interferon 500 μ/mL, LPS 3 mg/L, C. neoformans cells 1.6 × 104/well and Flucytosine 50 mg/L. Plates are incubated for 24 hours at 37 °C. Cell supernatants are collected and cells lysed by adding 0.1 mL sterile distilled water to each well, incubating at room temperature for 30 minutes, and then aspirating and ejecting the lysate with a pipette several times to complete cell disruption. Wells are rinsed with PBS (0.1 mL) and the cell supernatant, and lysate and rinse from each well are pooled, vortexed, diluted 1:50, vortexed again and spread on Sabouraud's dextrose agar for the cfu determination
Animal Study [4]
Animal Models Male Sprague-Dawley rats
Formulation Dissolved in 5% glucose
Doses 5 mg/kg/min
Administration In situ renal perfusion at a rate of 0.13 mL/min
References
[1] St-Germain G. Mycoses, 2001, 44(1-2), 37-45.
[2] Feldmesser M, et al. J Antimicrob Chemother, 1996, 37(3), 617-622.
[3] Te Dorsthorst DT, et al. Antimicrob Agents Chemother, 2002, 46(9), 2982-2989.
[4] Heidemann HT, et al. Antimicrob Agents Chemother, 1992, 36(12), 2670-2675.
Sigma Aldrich - F7129 external link
Application
Used in studies on TMP biosynthesis.
Biochem/physiol Actions
Nucleoside analog that has antifungal activities. 5-FC is deaminated by cytosine deaminase to product 5-fluorouracil, resulting in RNA miscoding. 5-Fluorocytosine inhibits DNA and RNA synthesis and interferes with ribosomal protein synthesis.
Packaging
1, 5 g in poly bottle
Sigma Aldrich - 271594 external link
Biochem/physiol Actions
Nucleoside analog that has antifungal activities. 5-FC is deaminated by cytosine deaminase to product 5-fluorouracil, resulting in RNA miscoding. 5-Fluorocytosine inhibits DNA and RNA synthesis and interferes with ribosomal protein synthesis.
Packaging
1 g in glass bottle
Sigma Aldrich - 46850 external link
Biochem/physiol Actions
Nucleoside analog that has antifungal activities. 5-FC is deaminated by cytosine deaminase to product 5-fluorouracil, resulting in RNA miscoding. 5-Fluorocytosine inhibits DNA and RNA synthesis and interferes with ribosomal protein synthesis.
Toronto Research Chemicals - F589000 external link
5-FC is a toxic antifungal/antimicrobial agent.

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