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131740-09-5 molecular structure
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2-(2-chlorophenyl)-5,7-dihydroxy-8-[(3S,4R)-3-hydroxy-1-methylpiperidin-4-yl]-4H-chromen-4-one hydrochloride

ChemBase ID: 73215
Molecular Formular: C21H21Cl2NO5
Molecular Mass: 438.30114
Monoisotopic Mass: 437.07967814
SMILES and InChIs

SMILES:
c1c(c(c2c(c1O)c(=O)cc(o2)c1c(cccc1)Cl)[C@@H]1[C@@H](CN(CC1)C)O)O.Cl
Canonical SMILES:
CN1CC[C@@H]([C@@H](C1)O)c1c(O)cc(c2c1oc(cc2=O)c1ccccc1Cl)O.Cl
InChI:
InChI=1S/C21H20ClNO5.ClH/c1-23-7-6-12(17(27)10-23)19-14(24)8-15(25)20-16(26)9-18(28-21(19)20)11-4-2-3-5-13(11)22;/h2-5,8-9,12,17,24-25,27H,6-7,10H2,1H3;1H/t12-,17+;/m0./s1
InChIKey:
LGMSNQNWOCSPIK-LWHGMNCYSA-N

Cite this record

CBID:73215 http://www.chembase.cn/molecule-73215.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
2-(2-chlorophenyl)-5,7-dihydroxy-8-[(3S,4R)-3-hydroxy-1-methylpiperidin-4-yl]-4H-chromen-4-one hydrochloride
IUPAC Traditional name
flavopiridol hydrochloride
Synonyms
Flavopiridol hydrochloride
L-86-8276
NSC-649890
(-)-2-(2-Chlorophenyl)-5,7-dihydroxy-8-[(3S,4R)-3-hydroxy-1-methyl-4-piperidinyl]-4H-1-benzopyran-4-one hydrochloride
Flavopiridol hydrochloride hydrate
rel-(-)-2-(2-Chlorophenyl)-5,7-dihydroxy-8-[(3S,4R)-3-hydroxy-1-methyl-4-piperidinyl]-4H-1-benzopyran-4-one Hydrochloride
Alvocidib Hydrochloride
HL 275
MDL 107826A
NSC 649890
(-)-2-(2-chlorophenyl)-5,7-dihydroxy-8-[(3s,4r)-3-hydroxy-1-methyl-4-piperidinyl]-4h-1-benzopyran-4-one 盐酸盐
Flavopiridol 盐酸盐
CAS Number
131740-09-5
PubChem SID
162038135
24724481
PubChem CID
9910986

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID
PubChem 9910986 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 6.7070923  H Acceptors
H Donor LogD (pH = 5.5) 1.5368674 
LogD (pH = 7.4) 2.4093697  Log P 2.4789917 
Molar Refractivity 107.738 cm3 Polarizability 40.77841 Å3
Polar Surface Area 90.23 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Physical Property Safety Information Product Information Bioassay(PubChem)
Solubility
DMSO expand Show data source
DMSO: >5 mg/mL expand Show data source
H2O: ~2 mg/mL expand Show data source
Methanol expand Show data source
Apperance
white to light brown powder expand Show data source
Yellow Solid expand Show data source
Melting Point
183-187°C expand Show data source
Storage Condition
-20°C expand Show data source
-20°C Freezer expand Show data source
desiccated expand Show data source
European Hazard Symbols
Harmful Harmful (Xn) expand Show data source
MSDS Link
Download expand Show data source
Download expand Show data source
German water hazard class
3 expand Show data source
Risk Statements
22 expand Show data source
GHS Pictograms
GHS07 expand Show data source
GHS Signal Word
Warning expand Show data source
GHS Hazard statements
H302 expand Show data source
Personal Protective Equipment
dust mask type N95 (US), Eyeshields, Gloves expand Show data source
Storage Temperature
2-8°C expand Show data source
Purity
≥98% (HPLC) expand Show data source
Salt Data
HCL expand Show data source
Certificate of Analysis
Download expand Show data source
Empirical Formula (Hill Notation)
C21H20ClNO5 ·HCl · xH2O expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals Sigma Aldrich Sigma Aldrich TRC TRC
Selleck Chemicals - S2679 external link
Biological Activity
Description Flavopiridol competes with ATP to inhibit CDKs including CDK1, CDK2, CDK4 and CDK6 with IC50 of ~ 40 nM, and CDK7 with IC50 of 300 nM.
Targets CDK1 CDK2 CDK4 CDK6 CDK7
IC50 40 nM 40 nM 40 nM 40 nM 300 nM [1]
In Vitro Flavopiridol is initially found to inhibit the epidermal growth factor receptor and protein kinase A (IC50 = 21 and 122 μM). Flavopiridol is later shown to inhibit cell proliferation, at more physiologically relevant concentrations (IC50 = 66 nM) when Flavopiridol is tested in the National Cancer Institute Development Therapeutics Program panel of 60 human tumor cell lines. [1] Flavopiridol induces G1 arrest with inhibition of CDK2 and CDK4 in human breast carcinoma cells in a time and concentration dependent manner. [2] Short time treatment of Flavopiridol (~12 hours) induce apoptosis in hematopoietic cell lines including SUDHL4, SUDHL6 (B-cell lines), Jurkat and MOLT4 (T-cell lines ), and HL60 (myeloid). [3] In the clonogenic assay, Flavopiridol functions as a highly potent cytotoxic compound with a mean IC70 with 8 ng/mL in 23 human tumor models. [4] A recent study shows Flavopiridol treatment induces a substantial AKT-Ser473 phosphorylation in human glioblastoma T98G cell line. [5]
In Vivo At the maximal tolerated dose of 10 mg/kg/day administered p.o. on days 1-4 and 7-11, Flavopiridol effects tumor regression in PRXF1337 and tumor stasis lasting for 4 weeks in PRXF1369. [4]After treatment with 7.5 mg/kg Flavopiridol bolus intravenous (IV) or intraperitoneal on each of 5 consecutive days, 11 out of 12 advanced stage subcutaneous (s.c.) human HL-60 xenografts undergo complete regressions, and animals remain disease-free several months after one course of Flavopiridol treatment. SUDHL-4 s.c. lymphomas treated with flavopiridol at 7.5 mg/kg bolus IV for 5 days undergo either major (two out of eight mice) or complete (four out of eight mice) regression, with two animals remaining disease-free for more than 60 days. The overall growth delay is 73.2%. [6]
Clinical Trials
Features
Combination Therapy
Description Flavopiridol is combined with several different anti-cancer drugs in Phase I or II clinical trials for several different cancers, for example acute myeloid leukemia, advanced stomach cancer or gastroesophageal junction cancer and so on.
Protocol
Kinase Assay [1]
Recombinant CDKs Kinase Reactions CDKs activities are determined in microtiter plates as follows. Forty μg Gst-Rb are mixed with different amounts of Flavopiridol and unlabeled ATP. Reactions are then started by the addition of an ammonium sulfate cut of the S100 fraction obtained from insect cells expressing recombinant human CDKs. The final reaction conditions are 10 mM MgCl 2, 50 mM Tris-HCl (pH 7.5), and 1 mM DTT. The final concentration of ATP is adjusted accordingly. Radiolabeled ATP is used as a phosphoryl donor. The reaction is carried out for 2.5 minutes at 30 °C after addition of enzyme and then terminated with the addition of EDTA. The Gst-Rb is then captured with glutathione-Sepharose and the incorporated radioactivity is determined by liquid scintillation counting.
Cell Assay [2]
Cell Lines SUDHL4, SUDHL6, Jurkat, MOLT4, and HL60
Concentrations 0, 100 500, 5000 nM
Incubation Time 14 hours
Methods Cells grown at a density of 1 × 106 cells/mL are exposed to Flavopiridol for different concentrations and time periods. DNA is extracted. Briefly, cells are washed once with cold phosphate-buffered saline (PBS) and lysed with 3 mL lysis buffer (5 mM Tris-HCL [pH 7.5]; 20 mM EDTA; 0.5% Triton X-100) for 15 minutes at 4 °C. The chromatin of the cell lysates is isolated by centrifugation (20 minutes at 26,000g, 4 °C). The supernatants containing small DNA fragments are extracted sequentially with phenol, phenol:chloroform (1:1), and chloroform. Nucleic acids are precipitated in 0.5 M NaCl, 90% ethanol at -20 °C overnight. RNA is then digested by bovine RNAaseA (60 μg/mL). After sequential reextraction and reprecipitation, DNA is dissolved in 10 mM Tris-HCL (pH 7.5), 1 mM EDTA, 0.5% sodium dodecyl sulfate (SDS) before electrophoresis on 1.6% agarose gel.
Animal Study [4]
Animal Models human prostate cancer xenografts, PRXFI337 and PRXFI369, grown s.c. in nude mice
Formulation Flavopiridol is dissolved in water.
Doses 10 mg/kg/d
Administration Flavopiridol is administered p.o. on days 1-4 and 7-11.
References
[1] Senderowicz AM, Oncologist, 2002, 7 Suppl 3:12-9.
[2] Carlson BA, et al, Cancer Res, 1996, 56(13), 2973-2978.
[3] Parker BW, et al, Blood, 1998, 91(2), 458-465.
[4] Drees M, et al, Clin Cancer Res, 1997, 3(2), 273-279.
[5] Caracciolo V, et al, Cell Cycle, 2012, 11(6), 1202-1216.
[6] Parker BW, et al, Blood, 1998, 91(2), 458-465.
Sigma Aldrich - F3055 external link
Biochem/physiol Actions
Flavopiridol hydrochloride is a potent CDK (cyclin-dependent kinase), and a CDC25 phosphatase family inhibitor.
Toronto Research Chemicals - F373000 external link
An inhibitor of cyclin-dependent kinases; the (-)-cis form induces apoptosis in certain tumor cells.

REFERENCES

REFERENCES

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