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1038915-60-4 molecular structure
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2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide

ChemBase ID: 73204
Molecular Formular: C19H20N4O
Molecular Mass: 320.3883
Monoisotopic Mass: 320.16371128
SMILES and InChIs

SMILES:
c1ccc2c(c1C(=O)N)nn(c2)c1ccc(cc1)[C@H]1CNCCC1
Canonical SMILES:
NC(=O)c1cccc2c1nn(c2)c1ccc(cc1)[C@@H]1CCCNC1
InChI:
InChI=1S/C19H20N4O/c20-19(24)17-5-1-3-15-12-23(22-18(15)17)16-8-6-13(7-9-16)14-4-2-10-21-11-14/h1,3,5-9,12,14,21H,2,4,10-11H2,(H2,20,24)/t14-/m1/s1
InChIKey:
PCHKPVIQAHNQLW-CQSZACIVSA-N

Cite this record

CBID:73204 http://www.chembase.cn/molecule-73204.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide
IUPAC Traditional name
2-{4-[(3S)-piperidin-3-yl]phenyl}indazole-7-carboxamide
Synonyms
MK-4827
CAS Number
1038915-60-4
PubChem SID
162038124
PubChem CID
24958200

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID Price
Selleck Chemicals
S2741 external link Add to cart Please log in.
Data Source Data ID
PubChem 24958200 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 14.028752  H Acceptors
H Donor LogD (pH = 5.5) -0.75519025 
LogD (pH = 7.4) -0.1204052  Log P 2.4680502 
Molar Refractivity 94.9203 cm3 Polarizability 37.722713 Å3
Polar Surface Area 72.94 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Storage Condition
-20°C expand Show data source
Target
PARP expand Show data source
Salt Data
Free Base expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals
Selleck Chemicals - S2741 external link
Research Area
Description Solid tumours
Biological Activity
Description MK-4827 is an selective inhibitor of PARP1 and PARP2 with IC50 of 3.8 nM and 2.1 nM, respectively.
Targets PARP1 PARP2
IC50 3.8 nM 2.1 nM [1]
In Vitro MK-4827 displays excellent PARP 1 and 2 inhibition with IC(50) = 3.8 and 2.1 nM, respectively, and in a whole cell assay, it inhibits PARP activity with EC(50) = 4 nM and inhibits proliferation of cancer cells with mutant BRCA-1 and BRCA-2 with CC(50) in the 10-100 nM range. [1]
In Vivo MK-4827 is well tolerated in vivo and demonstrates efficacy as a single agent in a xenograft model of BRCA-1 deficient cancer. [1] In addition, MK-4827 strongly enhances the effect of radiation on a variety of human tumor xenografts, both p53 wild type and p53 mutant. The enhancement of radiation response is observed in clinically relevant radiation-dose fractionation schedules. The therapeutic window during which time MK-4827 interacts with radiation lasts for several hours. These biological attributes make translation of this therapeutic combination treatment feasible for translation to the treatment of a variety of human cancers. [2]
Clinical Trials MK-4827 is currently in Phase I clinical trials in patients with Advanced Solid Tumors or Hematologic Malignancies.
Features
Protocol
Kinase Assay [1]
PARP-1 SPA Assay Enzyme assay is conducted in buffer containing 25 mM Tris, pH 8.0, 1 mM DTT, 1 mM spermine, 50 mM KCl, 0.01% Nonidet P-40, and 1 mM MgCl2. PARP reactions contains 0.1 μCi [3H] NAD+ (200 000 DPM), 1.5 μM NAD+, 150 nM biotinylated NAD+, 1 μg/mL activated calf thymus, and 1-5 nM PARP-1. Autoreactions utilizing SPA bead-based detection are carried out in 50 μL volumes in white 96-well plates. Compounds are prepared in 11-point serial dilution in 96-well plate, 5 μL/well in 5% DMSO/H2O (10×concentrated). Reactions are initiated by adding first 35 μL of PARP-1 enzyme in buffer and incubating for 5 min at room temperature and then 10 μL of NAD+ and DNA substrate mixture. After 3 h at room temperature, these reactions are terminated by the addition of 50 μL of streptavidin-SPA beads (2.5 mg/mL in 200 mM EDTA, pH 8). After 5 min, they are counted using a TopCount microplate scintillation counter. IC50 data is determined from inhibition curves at various substrate concentrations.
Cell Assay [1]
Cell Lines MDA-MB-436, CAPAN-1 cells, human prostate epithelial, human mammary epithelial
Concentrations 0-5 mM
Incubation Time 7 days
Methods Proliferation assays are conducted in 96-well black viewplates, and 300 cells/well (250 cell/well for BRCA-1 wt) in culture medium, 190 μL/well (DMEM containing 10% FCS, 0.1 mg/mL penicillin-streptomycin, and 2 mM L-glutamine), are plated and incubated for 4 h at 37 °C under 5% CO2 atmosphere. Inhibitors are then added with serial dilutions, 10 μL/well to obtain the desired final compound concentration in 0.5% DMSO. The cells are then incubated for 7 days at 37 °C in 5% CO2 after which time viability is assessed. Briefly, with CellTiter-Blue solution prediluted 1:10 in medium, 100 μL/well is added and the cells left for 45 min at 37 °C under 5% CO2 and then a further 15 min at room temperature in the dark. The number of living cells is determined by reading the plate at fluorimeter, excitation at 550 nm and emission at 590 nm. Cell growth is expressed as the percentage growth with respect to vehicle treated cells. The concentration required to inhibit cell growth by 50% (CC50) is determined.
Animal Study [1]
Animal Models Xenograft model of BRCA-1 deficient cancer
Formulation in water
Doses 100 mg/kg q.d. or 50 mg/kg b.i.d
Administration Orally
References
[1] Jones P, J Med Chem, 2009, 52(22), 7170-7185
[2] Wang L, Invest New Drugs, 2011

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