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1032754-93-0 molecular structure
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(2S)-1-(4-{[2-(2-aminopyrimidin-5-yl)-7-methyl-4-(morpholin-4-yl)thieno[3,2-d]pyrimidin-6-yl]methyl}piperazin-1-yl)-2-hydroxypropan-1-one

ChemBase ID: 73198
Molecular Formular: C23H30N8O3S
Molecular Mass: 498.6011
Monoisotopic Mass: 498.21615786
SMILES and InChIs

SMILES:
c1(cnc(nc1)N)c1nc(c2c(n1)c(c(s2)CN1CCN(CC1)C(=O)[C@@H](O)C)C)N1CCOCC1
Canonical SMILES:
O=C(N1CCN(CC1)Cc1sc2c(c1C)nc(nc2N1CCOCC1)c1cnc(nc1)N)[C@@H](O)C
InChI:
InChI=1S/C23H30N8O3S/c1-14-17(13-29-3-5-31(6-4-29)22(33)15(2)32)35-19-18(14)27-20(16-11-25-23(24)26-12-16)28-21(19)30-7-9-34-10-8-30/h11-12,15,32H,3-10,13H2,1-2H3,(H2,24,25,26)/t15-/m0/s1
InChIKey:
YOVVNQKCSKSHKT-HNNXBMFYSA-N

Cite this record

CBID:73198 http://www.chembase.cn/molecule-73198.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
(2S)-1-(4-{[2-(2-aminopyrimidin-5-yl)-7-methyl-4-(morpholin-4-yl)thieno[3,2-d]pyrimidin-6-yl]methyl}piperazin-1-yl)-2-hydroxypropan-1-one
IUPAC Traditional name
(2S)-1-(4-{[2-(2-aminopyrimidin-5-yl)-7-methyl-4-(morpholin-4-yl)thieno[3,2-d]pyrimidin-6-yl]methyl}piperazin-1-yl)-2-hydroxypropan-1-one
Synonyms
RG7422
GDC-0980
CAS Number
1032754-93-0
PubChem SID
162038118
PubChem CID
25254071

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID Price
Selleck Chemicals
S2696 external link Add to cart Please log in.
Data Source Data ID
PubChem 25254071 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 13.472439  H Acceptors 10 
H Donor LogD (pH = 5.5) -0.037138592 
LogD (pH = 7.4) 1.3610766  Log P 1.5212322 
Molar Refractivity 146.1142 cm3 Polarizability 51.95809 Å3
Polar Surface Area 133.83 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Storage Condition
-20°C expand Show data source
Target
mTOR / PI3K expand Show data source
Salt Data
Free expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals
Selleck Chemicals - S2696 external link
Research Area
Description Cancer
Biological Activity
Description GDC-0980 (RG7422) is a potent, selective inhibitor of PI3Kα, PI3Kβ, PI3Kδ and PI3Kγ with IC50 of 5 nM, 27 nM, 7 nM, and 14 nM, and also a mTOR inhibitor with Ki of 17 nM.
Targets PI3Kα PI3Kβ PI3Kδ PI3Kγ mTOR
IC50 5 nM [1] 27 nM [1] 7 nM [1] 14 nM [1] 17 nM (Ki) [1]
In Vitro GDC-0980 shows the potent and selective inhibitory activities against class I PI3K and mTOR kinase versus a large panel of kinases with Ki of 17 nM for mTOR and IC50 of 5 nM, 27 nM, 7 nM, and 14 nM for PI3Kα, β, δ, and γ, respectively. [1] In vitro, GDC-0980 significantly inhibits cell proliferation in PC3 and MCF7 cells with IC50 of 307 nM and 255 nM, respectively. [1] A recent study shows that GDC-0980 reduces cancer cell viability by inhibiting cell-cycle procession and inducing apoptosis with most potency in prostate (IC50 < 200="" nm="" 50%),=""><500 nm="" 100%),="" breast="" (ic50=""><200 nm="" 37%,=""><500 nm="" 78%)="" and="" nsclc="" lines="" (ic50=""><200 nm="" 29%,=""><500 nm="" 88%)="" and="" less="" potency="" in="" pancreatic="" (ic50=""><200 nm="" 13%,=""><500 nm="" 67%)="" and="" melanoma="" cell="" lines="" (ic50=""><200 nm="" 0%,=""><500 nm="" 33%).="">[2]
In Vivo In both PC-3 and MCF-7 neo/HER2 xenograft models, GDC-0980 at a dose of 1 mg/kg, exhibits significant antitumor activity by causing tumor growth delay. Furthermore, GDC-0980 results in tumor stasis or regressions at the maximum tolerated dose of 7.5 mg/kg. [1] In mice, intravenous GDC-0980 administration at 1 mg/kg leads to low clearance (Clp: 9.2 mL/min/kg, Vss: 1.7 L/kg). While, oral administration at 5 mg/kg in 80% PEG400 and at 50 mg/kg as a crystalline suspension in 0.5% methylcellulose/0.2% Tween-80 also results in favorable pharmacokinetic parameters. [1]
Clinical Trials GDC-0980 is currently in Phase II clinical trials in patients with recurrent or persistent endometrial carcinoma.
Features GDC-0980 (RG7422) is a potent, selective, and orally available inhibitor of PI3Kα, β, δ, γ and mTOR.
Combination Therapy
Description In PC-3 and 786-0 cells, combination treatment of sunitinib and GDC-0980 results in a synergistic induction of DNA fragmentation. [3] GDC-0980 in combination with paclitaxel with or without bevacizumab is currently in Phase I clinical trials in patients with locally recurrent or metastatic breast cancer.
Protocol
Kinase Assay [1]
Enzymatic activity Enzymatic activity of the Class I PI3K isoforms is measured using a fluorescence polarization assay that monitors formation of the product 3,4,5-inositoltriphosphate molecule as it competes with fluorescently labeled PIP3 for binding to the GRP-1 pleckstrin homology domain protein. An increase in phosphatidyl inositide-3-phosphate product results in a decrease in fluorescence polarization signal as the labeled fluorophore is displaced from the GRP-1 protein binding site. Class I PI3K isoforms are expressed and purified as heterodimeric recombinant proteins. PI3K isoforms are assayed under initial rate conditions in the presence of 10 mM Tris (pH 7.5), 25 μM ATP, 9.75 μM PIP2, 5% glycerol, 4 mM MgCl2, 50 mM NaCl, 0.05% (v/v) Chaps, 1 mM dithiothreitol, 2% (v/v) DMSO at the following concentrations for each isoform: PI3Kα,β at 60 ng/mL; PI3Kγ at 8 ng/mL; PI3Kδ at 45 ng/mL. After assay for 30 minutes at 25°C, reactions are terminated with a final concentration of 9 mM EDTA, 4.5 nM TAMRA-PIP3, and 4.2 μg/mL GRP-1 detector protein before reading fluorescence polarization on an Envision plate reader. IC50s are calculated from the fit of the dose?response curves to a 4-parameter equation.Human recombinant mTOR(1360?2549) is expressed and purified from insect cells and assayed using a Lanthascreen fluorescence resonance energy transfer format in which phosphorylation of recombinant green fluorescent protein (GFP)-4-EBP1 is detected using a terbium-labeled antibody to phospho-threonine 37/46 of 4-EBP1. Reactions are initiated with ATP and conducted in the presence of 50 mM Hepes (pH 7.5), 0.25 nM mTOR, 400 nM GFP-4E-BP1, 8 μM ATP, 0.01% (v/v) Tween 20, 10 mM MnCl2, 1 mM EGTA, 1 mM dithiothreitol, and 1% (v/v) DMSO. Assays are conducted under initial rate conditions at room temperature for 30 minutes before terminating the reaction and detecting product in the presence of 2 nM Tb-anti-p4E-BP1 antibody and 10 mM EDTA. Dose?response curves are fit to an equation for competitive tight-binding inhibition and apparent Ki' s are calculated using the determined Km for ATP of 6.1 μM.
Cell Assay [1]
Cell Lines PC3 and MCF7.1
Concentrations 0 to 10 μM
Incubation Time 72 hours or 96 hours
Methods Antiproliferative cellular assays are conducted using PC3 and MCF7.1 human tumor cell lines. MCF7.1 is an in vivo selected line and originally derived from the parental human MCF7 breast cancer cell line. Cell lines are cultured in RPMI supplemented with 10% fetal bovine serum, 100 units/mL penicillin, and 100 μg/mL streptomycin, 10 mM HEPES, and 2 mM glutamine at 3°C under 5% CO2. MCF7.1 cells or PC3 cells are seeded in 384-well plates in media at 1000 cells/well or 3000 cells/well, respectively, and incubated overnight prior to the addition of GDC-0980 to a final DMSO concentration of 0.5% v/v. MCF7.1 cells and PC3 cells are incubated for 3 days and 4 days, respectively, prior to the addition of CellTiter-Glo reagen and reading of luminescence using an Analyst plate reader. For antiproliferative assays, a cytostatic agent such as aphidicolin and a cytotoxic agent such as staurosporine are included as controls. Dose?response curves are fit to a 4-parameter equation and relative IC50s are calculated using Assay Explorer software.
Animal Study [1]
Animal Models PC3 and MCF7.1 cells are injected s.c. into the right hind flank of athymic nu/nu (nude) mice.
Formulation GDC-0980 is dissolved in 0.5% methylcellulose with 0.2% Tween-80 (MCT).
Doses ≤7.5 mg/kg
Administration Administered via p.o.
References
[1] Sutherlin DP, et al. J Med Chem, 2011, 54(21), 7579-7587.
[2] Wallin JJ, et al. Mol Cancer Ther, 2011, 10(12), 2426-2436.
[3] Makhov PB, et al. 2012. doi: 10.1158/1535-7163.MCT-11-0907.

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