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1202777-78-3 molecular structure
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5-[2,6-bis(morpholin-4-yl)pyrimidin-4-yl]-4-(trifluoromethyl)pyridin-2-amine

ChemBase ID: 73108
Molecular Formular: C18H21F3N6O2
Molecular Mass: 410.3935496
Monoisotopic Mass: 410.1678086
SMILES and InChIs

SMILES:
c1c(ncc(c1C(F)(F)F)c1nc(nc(c1)N1CCOCC1)N1CCOCC1)N
Canonical SMILES:
Nc1ncc(c(c1)C(F)(F)F)c1cc(nc(n1)N1CCOCC1)N1CCOCC1
InChI:
InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23)
InChIKey:
CWHUFRVAEUJCEF-UHFFFAOYSA-N

Cite this record

CBID:73108 http://www.chembase.cn/molecule-73108.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
5-[2,6-bis(morpholin-4-yl)pyrimidin-4-yl]-4-(trifluoromethyl)pyridin-2-amine
IUPAC Traditional name
5-[2,6-bis(morpholin-4-yl)pyrimidin-4-yl]-4-(trifluoromethyl)pyridin-2-amine
Synonyms
BKM120
BKM-120
CAS Number
1202777-78-3
PubChem SID
162038028
PubChem CID
16654980

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID Price
Selleck Chemicals
S2247 external link Add to cart Please log in.
Data Source Data ID
PubChem 16654980 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
H Acceptors H Donor
LogD (pH = 5.5) 1.9495236  LogD (pH = 7.4) 2.5464704 
Log P 2.5608492  Molar Refractivity 103.5829 cm3
Polarizability 37.79837 Å3 Polar Surface Area 89.63 Å2
Rotatable Bonds Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Storage Condition
-20°C expand Show data source
Target
PI3K expand Show data source
Salt Data
Free Base expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals
Selleck Chemicals - S2247 external link
Research Area
Description Solid tumours, Endometrial cancer , Breast cancer
Biological Activity
Description BKM120 is a selective PI3K inhibitor of p110α, p110β, p110δ and p110γ with IC50 of 52-99 nM, 166 nM, 116 nM and 262 nM, respectively.
Targets p110α p110β p110δ p110γ
IC50 52-99 nM 166 nM 116 nM 262 nM [1]
In Vitro BKM120 is not sensitive to Class III and Class IV PI3K's or PI4K. NVP-BKM120 shows great antiproliferation activity to PI3K deregulated cell lines including A2780, U87MG, MCF7 and DU145 with GI50 of 0.1-0.7 nM. [1] BKM120 induces multiple myeloma cells (ARP1, ARK, MM.1S, MM1.R and U266) apoptosis, which results in increased G1-phase cells and decreased S-phase cells. BKM120 induced CD138+ primary MM cell apoptosis and has significant lower cytotoxicity toward CD138? stromal cells. BKM120 exposure could cause upregulation of BimS and downregulation of XIAP. [2] BKM120 demonstrates antiproliferative activity in human gastric cancer cell lines by decreasing mTOR downstream signaling. BKM120 could increase either p-ERK or p-STAT3 in KRAS mutant gastric cancer cells. Combination with STAT3 blockade, BKM120 shows a synergism in cells harboring mutated KRAS by inducing apoptosis, but not in KRAS wild-type cells. [3] A recent study shows that BKM120 shows differential forms of cell death on the basis of p53 status of the cells with p53 wild-type cells undergoing apoptotic cell death and p53 mutant/deleted cells having a mitotic catastrophe cell death. BKM120 mediates mitotic catastrophe mainly through Aurora B kinase. [4]
In Vivo BKM120 completely inhibits pAktser473 in A2780 xenograft tumors at doses of 30, 60, or 100 mg/kg, respectively. BKM120 also shows antitumor activity against U87MG glioma model at doses of 30 and 60 mg/kg. [1] BKM120 treatment results in significantly reduced tumor volume and level of circulating human kappa chain at 5 μM/kg/day?1in ARP1 SCID mouse model, with prolonged survival. [2]
Clinical Trials Current under Phase II in men with metastatic castration-resistant prostate cancer.
Features
Protocol
Kinase Assay [1]
PI3K biochemical assay (ATP depletion assay) BKM120 is dissolved in DMSO and directly distributed into a black 384-well plate at 1.25 μL per well. To start the reaction, 25 μL of 10 nM PI3 kinase and 5 μg/mL 1-α-phosphatidylinositol (PI) in assay buffer (10 mM Tris pH 7.5, 5 mM MgCl2, 20 mM NaCl, 1 mM DTT and 0.05% CHAPS) are added into each well followed by 25 μL of 2 μM ATP in assay buffer. The reaction is performed until approx 50% of the ATP is depleted and then stopped by the addition of 25 μL of KinaseGlo solution. The stopped reaction is incubated for 5 minutes and the remaining ATP is then detected via luminescence.
PI3K biochemical assay (filter binding assay) 50 μL/well of a 1:1 mixture of 100 μL/mL L-α-phosphatidylinositol and L-α-phosphatidylserine dissolved in chloroform:ethanol (2.2:7.8) is pipetted into 96-well MaxiSorpTM plates. The solvents are evaporated at room temperature and plates are washed with Tris-buffered saline (TBS, pH7.4). PI3Kα is incubated for 60 min at room temperature in coated plates in 50 μL medium containing [γ33P]-ATP (~6 kBq/well), 0.5 μM ATP (or higher), 5 mM MgCl2, 150 mM NaCl, 25 mM Tris-HCl pH7.4, and 1% DMSO. The reaction is started by adding PI3Kα (0.4 μg/ml, <2 nm)="" and="" stopped="" by="" adding="" 50="" μl="" of="" 50="" mm="" edta.="" plates="" are="" washed="" twice="" with="" tbs="" and="" dried;="" 100="" μl/well="">TM PS is added, and bound radioactivity is determined using a TopCountTM counter.
Cell Assay [1]
Cell Lines A2780 cells.
Concentrations 0-6.6 μM
Incubation Time 3 days.
Methods A2780 cells are cultured in DMEM supplemented with 10% FBS, L-glutamine, sodium pyruvate, and antibiotics. Cells are plated in the same medium at a density of 103 cells per well, 100 μL per well into black-walled-clear-bottom plates and incubated for 3-5 hours. BKM120 supplied in DMSO (20 mM) is diluted. The diluted BKM120 solution (2 μL), is then added to cell medium (500 μL) cell medium (concentration from 0-6.6 μM). Equal volumes of this solution (100 μL) are added to the cells in 96 well plates and incubated at 37 °C for 3 days and developed using Cell Titer Glo. Inhibition of cell proliferation is determined by luminescence read using Trilux.
Animal Study [1]
Animal Models U87MG and A2780 xenografts are established in female nu/nu mice.
Formulation In 15% Captisol.
Doses ~60 mg/kg.
Administration Dosed orally daily (q.d.).
References
[1] Burger MT, et al. ACS Med Chem Lett, 2011, 2 (10), 774–779.
[2] Zheng Y, et al. J Mol Med (Berl), 2011 Dec 30.
[3] Park E, et al. Int J Oncol, 2012, 40(4), 1259-1266.
[4] Koul D, et al. Clin Cancer Res, 2012, 18(1), 184-195.

PATENTS

PATENTS

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