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917111-44-5 molecular structure
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3-ethyl-1-[2-methoxy-4-(5-methyl-4-{[(1S)-1-(pyridin-3-yl)butyl]amino}pyrimidin-2-yl)phenyl]urea

ChemBase ID: 72888
Molecular Formular: C24H30N6O2
Molecular Mass: 434.534
Monoisotopic Mass: 434.24302423
SMILES and InChIs

SMILES:
n1cc(c(nc1c1cc(c(cc1)NC(=O)NCC)OC)N[C@H](c1cccnc1)CCC)C
Canonical SMILES:
CCC[C@@H](c1cccnc1)Nc1nc(ncc1C)c1ccc(c(c1)OC)NC(=O)NCC
InChI:
InChI=1S/C24H30N6O2/c1-5-8-19(18-9-7-12-25-15-18)28-22-16(3)14-27-23(30-22)17-10-11-20(21(13-17)32-4)29-24(31)26-6-2/h7,9-15,19H,5-6,8H2,1-4H3,(H2,26,29,31)(H,27,28,30)/t19-/m0/s1
InChIKey:
MTJHLONVHHPNSI-IBGZPJMESA-N

Cite this record

CBID:72888 http://www.chembase.cn/molecule-72888.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
3-ethyl-1-[2-methoxy-4-(5-methyl-4-{[(1S)-1-(pyridin-3-yl)butyl]amino}pyrimidin-2-yl)phenyl]urea
IUPAC Traditional name
3-ethyl-1-[2-methoxy-4-(5-methyl-4-{[(1S)-1-(pyridin-3-yl)butyl]amino}pyrimidin-2-yl)phenyl]urea
Synonyms
CYT997
CAS Number
917111-44-5
PubChem SID
162037809
PubChem CID
11351021

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID Price
Selleck Chemicals
S2195 external link Add to cart Please log in.
Data Source Data ID
PubChem 11351021 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 11.754229  H Acceptors
H Donor LogD (pH = 5.5) 4.0871162 
LogD (pH = 7.4) 4.3418026  Log P 4.345781 
Molar Refractivity 139.3296 cm3 Polarizability 48.144573 Å3
Polar Surface Area 101.06 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Storage Condition
-20°C expand Show data source
Target
Microtubule formation expand Show data source
Salt Data
Free Base expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals
Selleck Chemicals - S2195 external link
Research Area
Description Cancer
Biological Activity
Description CYT997 is a potent tubulin polymerization inhibitor with IC50 of ~3 μM.
Targets Tubulin
IC50 ~3 μM [1]
In Vitro CYT997 (1 μM) treatment for 24 hours in A549 cells induces rapid reorganization of microtubules including the destruction of the existing microtubule network and accumulation of tubulin in plaques within the cytoplasm of some cells, leading to significant cell morphology alterations including the loss of adhesion and cell rounding. CYT997 displays potent cytotoxic activity against a range of 16 cancer cells with IC50 ranging from 9 nM for HepG2 to 101 nM for KHOS/NP. Especially, CYT997 exhibits potent activity against HCT15 cells, known to possess the multidrug resistance mechanism Pgp (MDR+), with IC50 of 52 nM. Through inhibition of microtubule polymerization, CYT997 blocks the cell cycle at the G2-M boundary, and induces an increase in phosphorylated Bcl-2 and increased expression of cyclin B1, as well as caspase-3 activation and the generation of poly (ADP-ribose) polymerase. CYT997 treatment causes a rapid and reversible increase in the permeability of HUVEC monolayers with IC50 of ~80 nM at 1 hour of exposure. [1] Consistent with the disruption of cellular tubulin, CYT997 potently inhibits proliferation, induces cell cycle arrest and most importantly apoptosis of both human myeloma cell lines (HMCLs) and primary MM cells. [2]
In Vivo The half-life of CYT997 for oral administration (2.5 hours) to rats is slightly longer than that for intravenous administration (1.5 hours), with the absolute oral bioavailability being 50% to 70%. Oral administration of CYT997 induces dose-dependent inhibition of tumor growth of PC3 xenografts in mice, more potently compared with paclitaxel. CYT997 is also effective in an orthotopic syngeneic model using the mouse breast cancer 4T1 cells, which are some refractory to Paclitaxel treatment. A single dose of CYT997 (7.5 mg/kg, i.p.) reduces tumor blood flow significantly at 6 hours in liver metastases, to a similar extent as the positive control CA4P dosed at 100 mg/kg. [1] CYT997 treatment (15 mg/kg/day) significantly prolongs the survival in a murine model of aggressive systemic myelomatosis. [2]
Clinical Trials
Features
Combination Therapy
Description CYT997 also synergizes with Bortezomib to produce more potent anti-MM activity. [2]
Protocol
Kinase Assay [1]
Turbidimetric assay for tubulin polymerization The effect of CYT997 on microtubule polymerization is determined using conventional turbidimetric assay using bovine neuronal tubulin in which the assembly of microtubules is monitored by an increase in absorbance at 340 nm. Increasing concentrations of CYT997 is added to 100 μL of tubulin/GTP/glycerol. Turbidimetric assays of microtubule assembly is done by incubating bovine microtubule protein in cuvettes at 37 °C in a thermostatically controlled spectrophotometer measuring the change in absorbance at 340 nm over time in PEM buffer [80 nM PIPES (pH 6.9), 2 mM MgCl2, 0.5 mM EGTA, and 5% glycerol].
Cell Assay [1]
Cell Lines DU145, A549, Ramos, KHOS/NP, A375, HCT-15, HT1376, BT-20, A431, PA-1, U937, HepG2, TF-1, Baf3/TelJAK2, PC3, and K562
Concentrations Dissolved in DMSO, final concentrations ~1 μM
Incubation Time ~72 hours
Methods Cells are exposed to various concentrations of CYT997 for ~72 hours. Cell proliferation is assessed with either the Alamar blue or MTT assays. For MTT assays, 5 mg/mL of MTT is added to all wells, plates are incubated for 6 hours at 37 °C, and then lysis buffer is added (10% SDS in 0.01 N HCl) and absorbance is measured at 620 nm in a BMG Technologies Lumistar or Polarstar plate reader. For Alamar blue assays, Alamar blue (10 μL/well) is added to each well and the plates are incubated at 37 °C for 4 hours. The fluorescence is then measured using a fluorescence plate reader with an excitation filter at 544 nm and an emission filter at 590 nm. For cell cycle analysis, cells are fixed and permeabilized with 70% ethanol in PBS and incubated at 4 °C overnight. RNase-treated samples (10 μg RNase/mL for 20 minutes at 37 °C) are stained with propidium iodide (5 μg/mL) at 4 °C for a minimum of 10 minutes. Cell cycle variables are determined by fluorescence-activated cell sorting (FACS) analysis using a Beckman-Coulter Quanta SC MPL system and analyzed using CXP Software. For apoptosis analysis, cells are detached and collected. Annexin staining is done using the Vybrant Apoptosis Assay Kit. Cells are stored on ice and analyzed on a Beckman Coulter Quanta MPL within 1 hour of preparation. Annexin V–positive cells are determined using two-channel analysis.
Animal Study [1]
Animal Models Male nude mice inoculated s.c. with PC3 cells, and female BALB/c mice inoculated with 4T1 cells
Formulation Formulated in NMP/PEG300/saline
Doses ~30 mg/kg/day
Administration Oral gavage thrice a day
References
[1] Burns CJ, et al. Mol Cancer Ther, 2009, 8(11), 3036-3045.
[2] Monaghan K, et al. Invest New Drugs, 2011, 29(2), 232-238.

REFERENCES

REFERENCES

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