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425386-60-3 molecular structure
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(2S)-2-hydroxy-3-methyl-N-[(1S)-1-{[(1S)-3-methyl-2-oxo-2,3,4,5-tetrahydro-1H-3-benzazepin-1-yl]carbamoyl}ethyl]butanamide

ChemBase ID: 72760
Molecular Formular: C19H27N3O4
Molecular Mass: 361.43538
Monoisotopic Mass: 361.20015636
SMILES and InChIs

SMILES:
C([C@@H](C(=O)N[C@H](C(=O)N[C@@H]1C(=O)N(CCc2c1cccc2)C)C)O)(C)C
Canonical SMILES:
O=C([C@@H](NC(=O)[C@H](C(C)C)O)C)N[C@@H]1C(=O)N(C)CCc2c1cccc2
InChI:
InChI=1S/C19H27N3O4/c1-11(2)16(23)18(25)20-12(3)17(24)21-15-14-8-6-5-7-13(14)9-10-22(4)19(15)26/h5-8,11-12,15-16,23H,9-10H2,1-4H3,(H,20,25)(H,21,24)/t12-,15-,16-/m0/s1
InChIKey:
PKXWXXPNHIWQHW-RCBQFDQVSA-N

Cite this record

CBID:72760 http://www.chembase.cn/molecule-72760.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
(2S)-2-hydroxy-3-methyl-N-[(1S)-1-{[(1S)-3-methyl-2-oxo-2,3,4,5-tetrahydro-1H-3-benzazepin-1-yl]carbamoyl}ethyl]butanamide
IUPAC Traditional name
semagacestat
Synonyms
LY-450139
LY450139
Semagacestat
(2S)-2-Hydroxy-3-methyl-N-[(1S)-1-methyl-2-oxo-2-[[(1S)-2,3,4,5-tetrahydro-3-methyl-2-oxo-1H-3-benzazepin-1-yl]amino]ethyl]butanamide
LY 450139
CAS Number
425386-60-3
PubChem SID
162037681
PubChem CID
9843750

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID
PubChem 9843750 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 11.945252  H Acceptors
H Donor LogD (pH = 5.5) 0.39059076 
LogD (pH = 7.4) 0.3905798  Log P 0.3905909 
Molar Refractivity 97.2194 cm3 Polarizability 37.80995 Å3
Polar Surface Area 98.74 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Storage Condition
-20°C expand Show data source
MSDS Link
Download expand Show data source
Target
Y-Secretase expand Show data source
Salt Data
Free Base expand Show data source
Certificate of Analysis
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DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals TRC TRC
Selleck Chemicals - S1594 external link
Research Area
Description Neurological Disease
Biological Activity
Description Semagacestat (LY450139) is a γ-secretase blocker for Aβ42, Aβ40 and Aβ38 with IC50 of 10.9 nM, 12.1 nM and 12.0 nM, respectively. Semagacestat also inhibits Notch signaling with IC50 of 14.1 nM.
Targets Aβ42 Aβ40 Aβ38 Notch
IC50 10.9 nM 12.1 nM 12.0 nM 14.1 nM [1]
In Vitro Semagacestat reduces the secretion of Aβ42, Aβ40 and Aβ38 from H4 human glioma cells stably overexpressing human wild-type APP into the culture medium, with IC50 of 10.9 nM, 12.1 nM and 12.0 nM, respectively, without affecting cell viability. Semagacestat also increases β-CTF in cell lysates with ECmax of 16.0 nM, and the increase can be unexpectedly attenuated at high concentrations. Semagacestat inhibits Notch signaling with IC50 of 14.1 nM, and shows minimal Notch-sparing selectivity with Notch IC50/Aβ42 IC50 only 1.3. [1] Semagacestat causes a concentration-dependent decrease in Aβ40 secreted into the medium with IC50 of 111 nM from murine CTX expressing endogenous murine APP, but murine Aβ42 formation in CTX is roughly 12-fold less than Aβ40 in accordance with data for neurons from wild type mice. [2]
In Vivo Oral administration of Semagacestat (1 mg/kg) to 5.5-month old APP-transgenic Tg2576 mice significantly ameliorates memory deficits on spatial working memory using the Y-maze task, which disappears after 8 days subchronic dosing. LY450139 decreases hippocampal levels of both Aβ42 and Aβ40 at 10 mg/kg (22-23% reduction) and 30 mg/kg (36-41% reduction) and increases β-CTF at 0.3-10 mg/kg in a dose dependent manner with no inhibition on the processing of other γ-secretase substrates, such as Notch, N-cadherin or EphA4, in the brain, but impairs normal cognition in wild-type mice and 3-month-old Tg2576 mice failing to restore cognitive deficits in the Y-maze test. [1]
Clinical Trials Phase III study has been completed in evaluating the effect of LY450139 on the progression of Alzheimer's disease as compared with placebo.
Features Semagacestat is the best documented γ-secretase inhibitor that has reached clinical testing.
Protocol
Kinase Assay [1]
Cellular APP processing assay and Notch signaling assay H4 human glioma cells stably overexpressing human wild-type APP695 are treated with Semagacestat at various concentrations for 24 hours. Levels of Aβ42, Aβ40, and Aβ38 in the media are measured using separate ELISA kits. The expression vector of the constitutively active form of Notch (NotchΔE), encoding bases 1-60 and 5193-6657 of the human Notch1 coding region (NM_017617), is constructed into a pcDNA3.1 vector with a sequence modification from mouse to human. Notch signaling activity is evaluated using Cignal RBP-Jk Reporter Assay kit. RBP-Jk protein [CSL/CBF1/Su(H)/Lag1] is a transcription factor activated with Notch intracellular domain produced by γ-secretase. H4 cells are transiently transfected with the human NotchΔE expression vector and the RBP-Jk-responsive luciferase construct using Lipofectamine 2000, and then exposed to various concentrations of Semagacestat for 16 hours. Notch signaling is measured based on luciferase activity in the cell lysate using the Dual-Glo Luciferase Assay System.
Cell Assay [2]
Cell Lines Murine cortical neurons and cerebellar granule cells
Concentrations Dissolved in DMSO, final concentration ~10 μM
Incubation Time 24 hours
Methods Cells are incubated with Semagacestat for 24 hours. For detection of cell viability, the percentage of viable cells is quantified by their capacity to reduce 3-(4,5-dimethylthiazole-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) following incubation with 0.5 mg/mL MTT for 60 minutes. For the detection of sAPP species, cells are lysed and analysed by western blotting.
Animal Study [1]
Animal Models Female Tg2576 mice expressing human APP695 with the Swedish mutation (K670N/M671L)
Formulation Dissolved in 0.5% methyl cellulose.
Doses ~30 mg/kg
Administration Orally administered once daily
References
[1] Mitani Y, et al. J Neurosci, 2012, 32(6), 2037-2050.
[2] Elvang AB, et al. J Neurochem, 2009, 110(5), 1377-1387.
Toronto Research Chemicals - S255600 external link
Semagacestat is an inhibitor of the γ-secretase enzyme. γ-Secretase enzyme is pivotal in the generation of β-amyloid (Aβ), a neurotoxic endogenous peptide believed to be involved in the pathogenesis of Alzheimer's disease (AD).

REFERENCES

REFERENCES

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PATENTS

PATENTS

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