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422513-13-1 molecular structure
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N-[(3Z)-2-oxo-3-[phenyl({[4-(piperidin-1-ylmethyl)phenyl]amino})methylidene]-2,3-dihydro-1H-indol-5-yl]ethane-1-sulfonamide

ChemBase ID: 72728
Molecular Formular: C29H32N4O3S
Molecular Mass: 516.65438
Monoisotopic Mass: 516.2195119
SMILES and InChIs

SMILES:
c1(ccc2c(c1)/C(=C(\c1ccccc1)/Nc1ccc(cc1)CN1CCCCC1)/C(=O)N2)NS(=O)(=O)CC
Canonical SMILES:
CCS(=O)(=O)Nc1ccc2c(c1)/C(=C(\c1ccccc1)/Nc1ccc(cc1)CN1CCCCC1)/C(=O)N2
InChI:
InChI=1S/C29H32N4O3S/c1-2-37(35,36)32-24-15-16-26-25(19-24)27(29(34)31-26)28(22-9-5-3-6-10-22)30-23-13-11-21(12-14-23)20-33-17-7-4-8-18-33/h3,5-6,9-16,19,30,32H,2,4,7-8,17-18,20H2,1H3,(H,31,34)/b28-27-
InChIKey:
GLDSKRNGVVYJAB-DQSJHHFOSA-N

Cite this record

CBID:72728 http://www.chembase.cn/molecule-72728.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
N-[(3Z)-2-oxo-3-[phenyl({[4-(piperidin-1-ylmethyl)phenyl]amino})methylidene]-2,3-dihydro-1H-indol-5-yl]ethane-1-sulfonamide
IUPAC Traditional name
N-[(3Z)-2-oxo-3-[phenyl({[4-(piperidin-1-ylmethyl)phenyl]amino})methylidene]-1H-indol-5-yl]ethanesulfonamide
Synonyms
Hesperadin
CAS Number
422513-13-1
PubChem SID
162037649
PubChem CID
10142586

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID Price
Selleck Chemicals
S1529 external link Add to cart Please log in.
Data Source Data ID
PubChem 10142586 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 9.949264  H Acceptors
H Donor LogD (pH = 5.5) 0.29294237 
LogD (pH = 7.4) 1.717024  Log P 3.2076387 
Molar Refractivity 151.8544 cm3 Polarizability 57.366863 Å3
Polar Surface Area 90.54 Å2 Rotatable Bonds
Lipinski's Rule of Five false 

PROPERTIES

PROPERTIES

Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Storage Condition
-20°C expand Show data source
Target
Aurora kinase expand Show data source
Salt Data
Free Base expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals
Selleck Chemicals - S1529 external link
Research Area
Description Cancer
Biological Activity
Description Hesperadin inhibits Aurora B and T. brucei Aurora kinase-1 (TbAUK1) with IC50 of 250 nM and 40 nM, respectively.
Targets Aurora B (human) TbAUK1
IC50 250 nM [1] 40 nM [2]
In Vitro Hesperadin inhibits the ability of immunoprecipitated Aurora B to phosphorylate histone H3 with IC50 of 250 nM and markedly reduces the activity of other kinases (AMPK, Lck, MKK1, MAPKAP-K1, CHK1, and PHK) at a concentration of 1 μM. In contrast, only 20-100 nM of Hesperadin is sufficient to induce the loss of mitotic histone H3-Ser10 phosphorylation in HeLa cells. Hesperadin treatment causes defects in mitosis and cytokinesis, leading to stoppage of proliferation of HeLa cells and polyploidization, which can be specifically ascribed to the inhibition of Aurora B function during the process of chromosome attachment. Hesperadin (100 nM) quickly overrides the mitotic arrest induced by taxol or monastrol but not by nocodazole. Hesperadin and nocodazole treatment in HeLa cells abolishes kinetochore localization of BubR1 and diminishes the intensity of Bub1 at kinetochores, suggesting that Aurora B function is required for efficient kinetochore recruitment of BubR1 and Bub1, which in turn might be necessary for prolonged checkpoint signaling. [1] Hesperadin prevents the phosphorylation of recombinant trypanosome histone H3 by the T. brucei Aurora kinase-1 (TbAUK1) from pathogenic Trypanosoma brucei with IC50 of 40 nM in vitro kinase assays. Hesperadin significantly inhibits cell growth of cultured infectious bloodstream forms (BF) with IC50 of 48 nM, and only weakly inhibits cell growth of insect stage procyclic forms (PF) with IC50 of 550 nM. [2]
In Vivo
Clinical Trials
Features
Protocol
Kinase Assay [1]
The Aurora B kinase assay For the Aurora B kinase assay, HeLa cells are lysed in a buffer containing 50 mM NaCl. The whole cell extract is spun at 13,000 rpm for 20 minutes at 4 °C using a table top centrifuge. The pellet obtained from 200 mg of whole cell extract is extracted again in 15 mL lysis buffer containing 250 mM NaCl in order to obtain active Aurora B kinase from mitotic chromatin. The low speed supernatant of the latter extract is used for immunoprecipitation. Monoclonal mouse anti–AIM-1, or mouse anti-HA, is coupled to GammaBind Plus Sepharose, and beads are rotated over-end in the extract for 90 minutes at 4 °C. Beads are washed, aliquoted, and washed in kinase buffer (20 mM Tris, pH 7.5, 150 mM NaCl, 10 mM MgCl2, 1 mM DTT, 10 mM NaF). The kinase assay is performed with 10 μL beads in 20 μL kinase buffer containing 5 μg histone H3, 10 μM ATP, 2.5 μCi [γ-32P]ATP, and different concentrations of Hesperadin for 20 minutes at 37 °C. SDS sample buffer is added, and samples are boiled and resolved by SDS-PAGE. The gel is dried, and the radioactive signal is detected by PhosphorImager analysis. The data is analyzed using ImageQuant software.
Cell Assay [1]
Cell Lines HeLa cells and PtK1 cells
Concentrations Final concentration ~500 nM
Incubation Time 24 and 48 hours
Methods Cells are exposed to different concentrations of Hesperadin for 24 and 48 hours. At indicated time points, methanol-fixed cell samples are washed with PBS and subsequently stained in PI buffer (50 μg/mL propidium iodide, 10 mM Tris, pH 7.5, 5 mM MgCl2, 200 μg/mL RNase A) for 20-40 minutes at 37 °C. The DNA content is determined by flow cytometry.
References
[1] Hauf S, et al. J Cell Biol, 2003, 161(2), 281-294.
[2] Jetton N, et al. Mol Microbiol, 2009, 72(2), 442-458.

REFERENCES

REFERENCES

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