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69408-81-7 molecular structure
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11-amino-3-[2-(dimethylamino)ethyl]-3-azatricyclo[7.3.1.05,13]trideca-1(13),5,7,9,11-pentaene-2,4-dione

ChemBase ID: 72640
Molecular Formular: C16H17N3O2
Molecular Mass: 283.32508
Monoisotopic Mass: 283.1320768
SMILES and InChIs

SMILES:
c12cc(cc3c1c(ccc2)c(=O)n(c3=O)CCN(C)C)N
Canonical SMILES:
CN(CCn1c(=O)c2cc(N)cc3c2c(c1=O)ccc3)C
InChI:
InChI=1S/C16H17N3O2/c1-18(2)6-7-19-15(20)12-5-3-4-10-8-11(17)9-13(14(10)12)16(19)21/h3-5,8-9H,6-7,17H2,1-2H3
InChIKey:
UPALIKSFLSVKIS-UHFFFAOYSA-N

Cite this record

CBID:72640 http://www.chembase.cn/molecule-72640.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
11-amino-3-[2-(dimethylamino)ethyl]-3-azatricyclo[7.3.1.05,13]trideca-1(13),5,7,9,11-pentaene-2,4-dione
11-amino-3-[2-(dimethylamino)ethyl]-3-azatricyclo[7.3.1.0^{5,13}]trideca-1(13),5,7,9,11-pentaene-2,4-dione
IUPAC Traditional name
amonafide
Synonyms
5-Amino-2-[2-(dimethylamino)ethyl]-1H-benz[de]isoquinoline-1,3(2H)-dione
FA 142
M-FA 142
MADE-FA 142
NCI 308847
NSC 308847
Nafidimide
AS1413
Xanafide
Quinamed
Amonafide
CAS Number
69408-81-7
PubChem SID
162037565
PubChem CID
50515

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID
PubChem 50515 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
H Acceptors H Donor
LogD (pH = 5.5) -1.7992526  LogD (pH = 7.4) -0.05132785 
Log P 1.0962944  Molar Refractivity 83.3812 cm3
Polarizability 31.664867 Å3 Polar Surface Area 66.64 Å2
Rotatable Bonds Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Physical Property Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Solubility
DMSO expand Show data source
Methanol expand Show data source
Apperance
Brownish Yellow Solid expand Show data source
Melting Point
162-164°C expand Show data source
Storage Condition
-20°C expand Show data source
-20°C Freezer expand Show data source
MSDS Link
Download expand Show data source
Target
topoisomerase expand Show data source
Salt Data
Free Base expand Show data source
Certificate of Analysis
Download expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals TRC TRC
Selleck Chemicals - S1367 external link
Research Area
Description Prostate cancer,Ovarian cancer,Breast cancer
Biological Activity
Description Amonafide (NSC-308847) is a selective topoisomerase II inhibitor.
Targets Topoisomerase II
IC50
In Vitro Through a topoisomerase II-mediated reaction, Amonafide treatment produces DNA single-strand breaks (SSB), double-strand breaks (DSB), and DNA-protein cross-links in human myeloid leukemia cells. Amonafide treatment inhibits conlony formation of the leukemic cell lines and the normal human bone marrow GM-CFC in a dose-dependent manner. Amonafide does not produce topoisomerase I-mediated DNA cleavage even at 100 μM. The m-AMSA-resistant line is less than 2-fold resistant to Amonafide [1] Amonafide interferes with the DNA breakage-reunion activity of mammalian DNA topoisomerase II resulting in DNA cleavage stimulation. [2] Compared with those of other antitumor drugs, Amonafide-stimulated cleavage intensity patterns are markedly different. Amonafide highly prefers a cytosine, and excludes guanines and thymines instead, at position -1, with lower preference for an adenine at position +1. [3] Topoisomerase II-mediated DNA cleavage induced by Amonafide is affected only slightly (less than 3-fold) by 1 mM ATP, suggeting that Amonafide is an ATP-insensitive topoisomerase II inhibitor in contrast to doxorubicin, etoposide, and mitoxantrone. [4] Amonafide significantly inhibits the growth of HT-29, HeLa, and PC3 cells with IC50 of 4.67 μM, 2.73 μM, and 6.38 μM, respectively. [5] Amonafide is unaffected by P-glycoprotein-mediated efflux, unlike those of the classical topoisomerase II inhibitors (daunorubicin, doxorubicin, idarubicin, etoposide, and mitoxantrone). [6]
In Vivo
Clinical Trials A Phase I/II study of Amonafide in men with androgen-independent prostate cancer has been completed.
Features
Protocol
Cell Assay [5]
Cell Lines HT-29, HeLa, and PC3
Concentrations Dissolved in DMSO, final concentrations ~10 μM
Incubation Time 72 hours
Methods All cell lines are in the logarithmic phase of growth when the assay of 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) is carried out. Cells are harvested and seeded into 96-well tissue culture plates at a density of 2.5 × 103 cells/well in 150 μL aliquots of medium. The concentrations tested are serial dilutions of a stock solution (10 μM in DMSO) with phosphate-buffered saline (PBS) and are added 24 hours later. The assay is ended after 72 hours of Amonafide exposure and PBS is used as a negative control. After 72 hours treatment, cells are washed twice with PBS, and then 50 μL/well of MTT reagent (1 mg/mL in PBS) together with 150 μL/well of prewarmed medium are added. The plates are returned to the incubator for 4 hours. Subsequently, DMSO is added as solvent. Absorbance is determined at 570 nm with a Microplate reader. All experiments were performed at least three times, and the average of the percentage absorbance is plotted against concentration. Then, the concentration of Amonafide required to inhibit 50% of cell growth (IC50) is calculated for Amonafide.
References
[1] Andersson BS, et al. Cancer Res, 1987, 47(4), 1040-1044.
[2] Hsiang YH, et al. Mol Pharmacol, 1989, 36(3), 371-376.
[3] De Isabella P, Nucleic Acids Res, 1995, 23(2), 223-229.
[4] Wang H, et al. J Biol Chem, 2001, 276(19), 15990-15995.
[5] Braña MF, et al. J Med Chem, 2004, 47(6), 1391-1399.
[6] Chau M, et al. Leuk Res, 2008, 32(3), 465-473.
Toronto Research Chemicals - A634205 external link
Amonafide is a DNA intercalator and topoisomerase II inhibitor in clinical development for the treatment of neoplastic diseases. Antitumor agent.

REFERENCES

REFERENCES

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