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827318-97-8 molecular structure
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N-{5-[(2R)-2-methoxy-2-phenylacetyl]-1H,4H,5H,6H-pyrrolo[3,4-c]pyrazol-3-yl}-4-(4-methylpiperazin-1-yl)benzamide

ChemBase ID: 72515
Molecular Formular: C26H30N6O3
Molecular Mass: 474.5548
Monoisotopic Mass: 474.23793885
SMILES and InChIs

SMILES:
c1(ccccc1)[C@H](C(=O)N1Cc2c(C1)c(n[nH]2)NC(=O)c1ccc(cc1)N1CCN(CC1)C)OC
Canonical SMILES:
CO[C@@H](C(=O)N1Cc2c(C1)[nH]nc2NC(=O)c1ccc(cc1)N1CCN(CC1)C)c1ccccc1
InChI:
InChI=1S/C26H30N6O3/c1-30-12-14-31(15-13-30)20-10-8-19(9-11-20)25(33)27-24-21-16-32(17-22(21)28-29-24)26(34)23(35-2)18-6-4-3-5-7-18/h3-11,23H,12-17H2,1-2H3,(H2,27,28,29,33)/t23-/m1/s1
InChIKey:
XKFTZKGMDDZMJI-HSZRJFAPSA-N

Cite this record

CBID:72515 http://www.chembase.cn/molecule-72515.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
N-{5-[(2R)-2-methoxy-2-phenylacetyl]-1H,4H,5H,6H-pyrrolo[3,4-c]pyrazol-3-yl}-4-(4-methylpiperazin-1-yl)benzamide
IUPAC Traditional name
danusertib
Synonyms
4-(4-Methyl-1-piperazinyl)-N-[1,4,5,6-tetrahydro-5-[(2R)-2-methoxy-2-phenylacetyl]pyrrolo[3,4-c]pyrazol-3-yl]benzamide
PHA 739358
Danusertib
Danusertib
PHA-739358(Danusertib)
CAS Number
827318-97-8
PubChem SID
162037440
PubChem CID
11442891

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID
PubChem 11442891 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 10.494557  H Acceptors
H Donor LogD (pH = 5.5) 0.3035508 
LogD (pH = 7.4) 2.0187912  Log P 2.520763 
Molar Refractivity 138.1284 cm3 Polarizability 50.85849 Å3
Polar Surface Area 93.8 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Physical Property Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Solubility
DMSO expand Show data source
Storage Condition
-20°C expand Show data source
MSDS Link
Download expand Show data source
Target
Aurora Kinase expand Show data source
Bcr-Abl expand Show data source
FGFR expand Show data source
Salt Data
Free Base expand Show data source
Certificate of Analysis
Download expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals TRC TRC
Selleck Chemicals - S1107 external link
Research Area
Description Cancer
Biological Activity
Description Danusertib (PHA-739358) is an Aurora inhibitor for Aurora A, Aurora B, and Aurora C with IC50 of 13 nM, 79 nM, and 61 nM, respectively.
Targets Aurora A Aurora B Aurora C
IC50 13 nM 79 nM 61 nM [1]
In Vitro Danusertib inhibits the activities of other kinases such as FGFR1, Abl, Ret and Trka, with IC50 of 47, 25, 31, and 31 nM, respectively. In a cell assay, after treatment of wild-type and p53-deficient MEFs with danusertib, the wild-type cells undergo an arrest in mitosis (4N) that is maintained for up to 48 h. The p53-deficient cells on the other hand do not arrest at the 4N DNA stage, but continues with additional rounds of DNA synthesis to become >8N. Treatment with danusertib results in an increase in p53 protein levels and an associated increase in p21 protein, which is known to be transcriptionally regulated by p53. [1] Increasing concentrations of Danusertib produces a dose-dependent reduction of cell growth after 48 hours in BCR-ABL–positive (K562, BV173) and BCR-ABL–negative (HL60) cells. [2]
In Vivo Administration of 25 mg/kg danusertib bd i.v. to HL-60 xenograft rats results in 75% inhibition of tumor growth with complete regression in one animal. Danusertib results in biomarker modulation accompanied by inhibition of tumor growth. This is compatible with an expected mechanism of action of aurora kinase inhibition. [1] PHA-739358 significantly inhibits proliferation of K562 cells andvirtually suppressed tumor growth during the 10-day treatment period. [2]
Clinical Trials Danusertib is currently in a Phase II clinical trial in the treatment of leukemia.
Features
Protocol
Kinase Assay [1]
Biochemical kinase Assays The Km values for ATP and the specific substrate are initially determined, and each assay is then run at optimized ATP (2Km) and substrate (5Km) concentrations. This setting enabled direct comparison of IC50 values of Danusertib across the applied kinase selectivity screening panel for the evaluation of the selectivity profile.
Cell Assay [2]
Cell Lines CD34+ cells
Concentrations 5 μM
Incubation Time 5 days
Methods For short-term expansion assays, 1 × 103 CD34+ cells are plated in triplicates in 96-well plates containing 100 μL of serum-free medium per well supplemented with human stem-cell factor (100 ng/mL), human Flt-3 Ligand (100 ng/mL), human thrombopoietin (50 ng/mL), human interleukin-3 and -6 (IL-3 and IL-6, respectively, both 20 ng/mL), and granulocyte colony-stimulating factor (20 ng/mL) along with Danusertib at the indicated concentrations. After 5 days, an additional 100 μL of cytokine and Danusertib containing medium are added. Cell numbers within each individual well are estimated on days 3, 6, and 9 or on days 3, 6, and 12 for healthy donor samples.
Animal Study [2]
Animal Models Female SCID mice
Formulation In DMSO
Doses 15 mg/kg
Administration Intraperitoneally
References
[1] Carpinelli P, et al. Mol Cancer Ther, 2007, 12 Pt 1, 3158-3168.
[2] Gontarewicz A, et al. Blood, 2008, 111(8), 4355-4364.
Toronto Research Chemicals - D185070 external link
An Aurora kinase inhibitor, used to treat patients with chromic myeloid leukemia.

REFERENCES

REFERENCES

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PATENTS

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