(2E)-N-hydroxy-3-[4-({[2-(2-methyl-1H-indol-3-yl)ethyl]amino}methyl)phenyl]prop-2-enamide

• ChemBase ID: 72467
• Molecular Formular: C21H23N3O2
• Molecular Mass: 349.42622
• Monoisotopic Mass: 349.17902699
• SMILES: c1(ccc(cc1)/C=C/C(=O)NO)CNCCc1c([nH]c2c1cccc2)C
• Canonical SMILES: ONC(=O)/C=C/c1ccc(cc1)CNCCc1c(C)[nH]c2c1cccc2
• InChI: InChI=1S/C21H23N3O2/c1-15-18(19-4-2-3-5-20(19)23-15)12-13-22-14-17-8-6-16(7-9-17)10-11-21(25)24-26/h2-11,22-23,26H,12-14H2,1H3,(H,24,25)/b11-10+
• InChIKey: FPOHNWQLNRZRFC-ZHACJKMWSA-N

NAMES AND DATABASE IDS

Names

• IUPAC name: (2E)-N-hydroxy-3-[4-({[2-(2-methyl-1H-indol-3-yl)ethyl]amino}methyl)phenyl]prop-2-enamide
• IUPAC Traditional name: panobinostat
• Synonyms: Panobinostat; NVP-LBH589; LBH-589(Panobinostat); (2E)-N-Hydroxy-3-[4-[[[2-(2-methyl-1H-indol-3-yl)ethyl]amino]methyl]phenyl]-2-propenamide; LBH 589; Panobinostat

Database IDs

• CAS Number: 404950-80-7
• PubChem SID: 162037392
• PubChem CID: 6918837

CALCULATED PROPERTIES

• Acid pKa: 9.403277
• H Acceptors: 3
• H Donor: 4
• LogD (pH = 5.5): -0.01871185
• LogD (pH = 7.4): 0.7426275
• Log P: 2.3868325
• Molar Refractivity: 105.4985 cm^3
• Polarizability: 41.078636 Å^3
• Polar Surface Area: 77.15 Å^2
• Rotatable Bonds: 7
• Lipinski's Rule of Five: true

PROPERTIES

Physical Property

• Solubility: DMSO; Methanol
• Apperance: Yellow Solid
• Melting Point: 114-117°C

Safety Information

• Storage Condition: -20°C; -20°C Freezer, Under Inert Atmosphere

Pharmacology Properties

• Target: HDAC

Product Information

• Salt Data: Free Base

DETAILS

Selleck Chemicals - S1030

Research Area

• Description: Cancer

Biological Activity

• Description: LBH589 (Panobinostat) is a novel broad-spectrum HDAC inhibitor in MOLT-4 and Reh cells with IC50 of 5 nM and 20 nM, respectively.
• Targets: HDAC (MOLT-4 cells); HDAC (Reh cells)
• IC50: 5 nM; 20 nM ^[1]
• In Vitro: LBH589 induces apoptosis among MOLT-4 and Reh cells in a time- and dose-dependent manner. Moreover, LBH589 is more potent in MOLT-4 than in Reh cells. LBH589 markedly prevents the growth of both MOLT-4 and Reh cells in a dose-dependent manner at 48 hours. LBH589 treatment causes a 2- to 3-fold increase in the number of cells in the G2/M phase of the cell cycle compared with the control cells. LBH589 is associated with induction of histone H3K9 and histone H4K8 acetylation as well as decreasing levels of c-Myc expression in a dose-dependent manner. LBH589 treatment also increases the levels of p21 expression. LBH589 treatment also decreases the levels of c-Myc after an initial increase at the lowest dose (10 nM) in Reh cells. In addition, LBH589 gives rise to substantial increases in mRNA levels of proapoptosis and DNA repair genes. LBH589 induces increased levels of acetylated histone H3 and H4 at the GADD45G promoter. ^[1] Besides, LBH589 inhibts growth of non small cell lung cancer cell lines (such as human H1299, L55 and A549 with IC50 of 5, 11 and 30 nM, respectively), mesothelioma (such as human OK-6 and Ok-5 with IC50 of 5 and 7 nM, respectively) and small cell lung cancer cell lines (such as human RG-1 and LD-T with IC50 of 4 and 5 nM, respectively). ^[2]
• In Vivo: In lung cancer and mesothelioma animal models, LBH589 markedly decreases tumor growth by 62%. LBH589 is equally effective in immunocompetent and severe combined immunodeficien-cymice, suggesting that the inhibition of tumor growth by LBH589 is not due to direct immunologic effects. Daily LBH589, given i.p. at 20 mg/kg for 5 days per week, leading to an average decrease in growth of 70%. Compared with the corresponding control tumors, LBH589 leads to a 53% decrease for H526-derived tumors, a 81% decrease for BK-T-derived tumors, a 76% decrease for RG-1- derived tumors, and a 70% decrease for H69-derived tumors. In contrast to the lack of tumor regression notes in NSCLC and Meso-derived xenografted tumors that are treated under identical conditions and doses, LBH589 results in dramatic tumor regression in SCLC-derived tumors and RG-1-derived tumor. ^[2]
• Clinical Trials: Combined with bortezomib,LBH589 is currently in Phase III clinical trial for the treatment of patients with relapsed multiple myeloma.

Combination Therapy

• Description: When either of the two recently approved agents for relapsed/refractory MM (Bortezomib and Lenalidomide) is added to the combination of LBH-589 plus Dexamethasone in MM1S cells, the efficacy is clearly superior to the respective individual agents or double combinations. LBH-589 plus Lenalidomide displays very synergistic results with combination index (CI) less than 0.1. Although the double combinations of LBH-589 plus either Lenalidomide or Bortezomib are highly effective, the antitumor activity increased even further with triple combinations. ^[3] Combination of LBH589 with _Bortezomib enhances cytotoxicity against patient multiple myeloma cells. ^[4] In the Bx-PC3 xenograft model, combination of LBH-589 with Paclitaxel results in a greater anti-tumor effect than LBH-589 alone- with 20% tumor regression and minimal cytotoxicity. ^[5]

Protocol

• Protocol: Cell Assay ^[1]
• Cell Lines: MOLT-4 cell lines and Reh (pre-B cells)
• Concentrations: 50 nM
• Incubation Time: 48 hours
• Methods: Untreated and LBH589-treated cells [human Ph- acute lymphoblastic leukemia MOLT-4 (T cells) and Reh (pre-B cells)] are stained with annexin V and propidium iodide using annexin V-FITC apoptosis detection kit I. The percentage of apoptotic and nonviable cells is determined by flow cytometry. At least 5 × 10^4 cells are collected with a CyAn ADP Violet cytometer. Percentage apoptosis is calculated considering all the annexin V-positive plus the annexin V/PI-positive cells; percentage loss of cell viability is calculated considering all the annexin V-positive plus the PI-positive and the annexinV/PI-positive cells.
• Protocol: Animal Study ^[2]
• Animal Models: Severe combined immunodeficiency (SCID) mice with M30 (10×10^6 cells) or A549 (5×10^6 cells)
• Formulation: Dextrose 5% in water
• Doses: 10 mg/kg, 20 mg/kg
• Administration: Administered via i.p. injection

References

• References: [1] Scuto A, et al. Blood. 2008, 111(10), 5093-5100.
• References: [2] Crisanti MC, et al. Mol Cancer Ther. 2009, 8(8), 2221-2231.
• References: [3] Ocio EM, et al. Haematologica, 2010, 95(5), 794-803.
• References: [4] Maiso P, et al. Cancer Res, 2006, 66(11), 5781-5789.
• References: [5] Atadja P, Cancer Lett, 2009, 280(2), 233-241.

Toronto Research Chemicals - P180500

The novel histone deacetylase inhibitor, LBH589, induces expression of DNA damage response genes and apoptosis in Ph- acute lymphoblastic leukemia cells.

REFERENCES

• Atadja P, Cancer Lett, 2009, 280(2), 233-241.
• Scuto A, et al. Blood. 2008, 111(10), 5093-5100.
• Crisanti MC, et al. Mol Cancer Ther. 2009, 8(8), 2221-2231.
• Ocio EM, et al. Haematologica, 2010, 95(5), 794-803.
• Maiso P, et al. Cancer Res, 2006, 66(11), 5781-5789.
• Claus, R., et al.: Oncogene, 22, 6489 (2003)
• Johnstone, R., et al.: Cancer Cell., 4, 13 (2003)
• Ying, J., et al.: Clin. Cancer Res., 11, 6442 (2003)
• Catley, L., et al.: Blood, 108, 3441 (2003)
• Steinberg, M., et al.: Clin. Ther., 29, 2289 (2003)