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796967-16-3 molecular structure
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3-[4-(3-amino-1H-indazol-4-yl)phenyl]-1-(2-fluoro-5-methylphenyl)urea

ChemBase ID: 72453
Molecular Formular: C21H18FN5O
Molecular Mass: 375.3989232
Monoisotopic Mass: 375.14953844
SMILES and InChIs

SMILES:
c12cccc(c1c(n[nH]2)N)c1ccc(cc1)NC(=O)Nc1c(ccc(c1)C)F
Canonical SMILES:
O=C(Nc1cc(C)ccc1F)Nc1ccc(cc1)c1cccc2c1c(N)n[nH]2
InChI:
InChI=1S/C21H18FN5O/c1-12-5-10-16(22)18(11-12)25-21(28)24-14-8-6-13(7-9-14)15-3-2-4-17-19(15)20(23)27-26-17/h2-11H,1H3,(H3,23,26,27)(H2,24,25,28)
InChIKey:
MPVGZUGXCQEXTM-UHFFFAOYSA-N

Cite this record

CBID:72453 http://www.chembase.cn/molecule-72453.html

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NAMES AND DATABASE IDS

NAMES AND DATABASE IDS

Names Database IDs
IUPAC name
3-[4-(3-amino-1H-indazol-4-yl)phenyl]-1-(2-fluoro-5-methylphenyl)urea
IUPAC Traditional name
3-[4-(3-amino-1H-indazol-4-yl)phenyl]-1-(2-fluoro-5-methylphenyl)urea
Synonyms
Linifanib
AL-39324
RG3635
ABT-869(Linifanib)
N-[4-(3-Amino-1H-indazol-4-yl)phenyl]-N'-(2-fluoro-5-methylphenyl)urea
ABT 869
Linifanib
CAS Number
796967-16-3
PubChem SID
162037378
PubChem CID
11485656

DATA SOURCES

DATA SOURCES

All Sources Commercial Sources Non-commercial Sources
Data Source Data ID
PubChem 11485656 external link

CALCULATED PROPERTIES

CALCULATED PROPERTIES

JChem
Acid pKa 10.403951  H Acceptors
H Donor LogD (pH = 5.5) 4.5095744 
LogD (pH = 7.4) 4.5101757  Log P 4.510597 
Molar Refractivity 111.4756 cm3 Polarizability 41.89321 Å3
Polar Surface Area 95.83 Å2 Rotatable Bonds
Lipinski's Rule of Five true 

PROPERTIES

PROPERTIES

Physical Property Safety Information Pharmacology Properties Product Information Bioassay(PubChem)
Solubility
DMSO expand Show data source
Methanol expand Show data source
Apperance
Beige Solid expand Show data source
Melting Point
180-183°C (dec.) expand Show data source
Storage Condition
-20°C expand Show data source
-20°C Freezer expand Show data source
MSDS Link
Download expand Show data source
Target
PDGFR expand Show data source
Salt Data
Free Base expand Show data source
Certificate of Analysis
Download expand Show data source

DETAILS

DETAILS

Selleck Chemicals Selleck Chemicals TRC TRC
Selleck Chemicals - S1003 external link
Research Area
Description Cancer
Biological Activity
Description Linifanib (ABT-869) is a novel, potent ATP-competitive RTK inhibitor for KDR, CSF-1R, Flt-1 and Flt-3 with IC50 of 4 nM, 3 nM, 3 nM and 3 nM, respectively.
Targets KDR CSF-1R Flt-1 Flt-3
IC50 4 nM 3 nM 3 nM 4 nM [1]
In Vitro Linifanib shows inhibitory to Kit, PDGFRβ and Flt4 with IC50 of 14 nM, 66 nM and 190 nM in kinases assay. Linifanib also inhibits ligand-induced KDR, PDGFRβ, Kit, and CSF-1R phosphorylation with IC50 of 2 nM, 2 nM, 31 nM and 10 nM at cellular level and this cellular potency could be affected by serum protein. Linifanib suppresses VEGF-stimulated HUAEC proliferation with IC50 of 0.2 nM. While Linifanib has weak activity against tumor cells which are not induced by VEGF or PDGF, except for MV4-11 leukemia cells (with constitutively active form of Flt3) with IC50 of 4 nM. Linifanib could cause a decrease in S and G2-M phases with a corresponding increase in the sub-G0-G1 apoptotic population in MV4-11 cells. [1] Linifanib binds to the ATP-binding site of CSF-1R with Ki of 3 nM. [2] Linifanib (10 nM) exhibits a reduced phosphorylation of Akt at Ser473 and decreased phosphorylation of GSK3βat Ser9 in Ba/F3 FLT3 ITD cell lines. [3]
In Vivo Linifanib (0.3 mg/kg) results in complete inhibition of KDR phosphorylation in lung tissue. Linifanib also inhibits the edema response with ED50 of 0.5 mg/kg. Linifanib (7.5 and 15 mg/kg, bid) significantly inhibits both bFGF- and VEGF-induced angiogenesis in the cornea. Linifanib inhibits tumor growth in flank xenograft models including HT1080, H526, MX-1 and DLD-1 with ED75 from 4.5-12 mg/kg. Linifanib also shows efficacy in A431 and MV4-11 xenografts at low dose levels. Linifanib (12.5 mg/kg bid) reveals a decrease of microvasculure density in MDA-231 xenograft. Linifanib shows a Cmax and AUC24 hours with 0.4 μg/mL and 2.7 μg?hour/mL in HT1080 fibrosarcoma model. [1]
Clinical Trials Linifanib is in a Phase III evaluation for hepatocellular carcinoma.
Features
Combination Therapy
Description Combination of AB869 with Rapamycin treatment reduces the tumors to the lowest volume, and is significantly better than single agent treatment. Combination treatment of ABT869 with Rapamycin shows synergistic effect on expression levels of p27 in subcutaneous Huh7 and SK-HEP-1 xenograft models. [4] In combination, ABT869 augments the effects seen with Paclitaxel in both (MDA-231 and MDA-435LM) of the orthotopic models. [5]
Protocol
Kinase Assay [1]
Kinase assays Potencies (IC50 values) are determined by assays of active kinase domains cloned and expressed in baculovirus using the FastBacbaculovirus expression system or obtained commercially. For tyrosine kinase assays, a biotinylated peptide substrate containing a single tyrosine is used with 1 mM ATP, anEu-cryptate–labeled anti-phosphotyrosine antibody (PT66), and Strepavidin-APC in a homogeneous time-resolved fluorescence assay. Serine/threonine kinases are assayed using 5 μM ATP, [33P]ATP, and a biotinylated peptide substrate with peptide capture and incorporation of 33P determined using a SA-Flashplate. Linifanib is assayed at multiple concentrations prepared by serial dilution of a DMSO stock solution of Linifanib. The concentration resulting in 50% inhibition of activity is calculated using nonlinear regression analysis of the concentration response data.
Cell Assay [1]
Cell Lines HUAEC, HT-29, HT1080, A431, MDA-435, MDA-231, H526, DLD-1, 9L and MV4-11 cells
Concentrations 0-100 μM
Incubation Time 72 hours
Methods Cells are seeded into 96-well plates at 2.5 × 103 per well and incubated with serum-free medium for 24 hours. Linifanib and VEGF (final, 10 ng/mL) are added and incubated for 72 hours in serum-free medium. For carcinoma cell lines, 3 × 103 cells/well are plated overnight in full growth medium. Linifanib is added to the cells in full growth medium and incubated for 72 hours. For leukemia cells, generally 5 × 104 per well are plated in full growth medium, Linifanib is added, and incubated for 72 hours. The effects on proliferation are determined by addition of Alamar Blue (final solution, 10%), incubation for 4 hours at 37 °C in a CO2 incubator and analysis in a fluorescence plate reader (544 nm, excitation: 590 nm, emission).
Animal Study [1]
Animal Models H526, DLD-1, MDA-231, MDA-435LM, HCT-116, H526, DLD-1, MDA-231, MDA-435LM, MV4-11 and MX-1 xenografts are established in mice.
Formulation 2% ethanol, 5% Tween 80, 20% PEG400, 73% saline
Doses ~ 10 mg/kg
Administration Oral administration
References
[1] Albert DH, et al. Mol Cancer Ther, 2006, 5(4), 995-1006.
[2] Guo J, et al. Mol Cancer Ther, 2006, 5(4), 1007-1013.
[3] Hernandez-Davies JE, et al. Mol Cancer Ther, 2011, 10(6), 949-959.
[4] Jasinghe VJ, et al. J Hepatol. 2008, 49(6), 985-997.
[5] Albert DH, et al. Mol Cancer Ther. 2006, 5(4), 995-1006.
Toronto Research Chemicals - L466450 external link
Linifanib (ABT 869) is an oral tyrosine kinase inhibitor with antineoplasic activity. As a dual inhibitor, Linifanib, is being tested on several different cancers.

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